Tomás Vinar

Michal Nánási, Tomás Vinar, Brona Brejová: Sequence Annotation with HMMs: New Problems and Their Complexity. CoRR abs/1210.2587 (2012)

Bronislava Brejová, Stefan Dobrev, Rastislav Královic, Tomás Vinar: Routing in Carrier-Based Mobile Networks. SIROCCO 2011: 222-233

Brona Brejová, Gad M. Landau, Tomás Vinar: Fast Computation of a String Duplication History under No-Breakpoint-Reuse - (Extended Abstract). SPIRE 2011: 144-155

Brona Brejová, Michal Burger, Tomás Vinar: Automated Segmentation of DNA Sequences with Complex Evolutionary Histories. WABI 2011: 1-13

Jakub Kovác, Brona Brejová, Tomás Vinar: A Practical Algorithm for Ancestral Rearrangement Reconstruction. WABI 2011: 163-174

Giltae Song, Louxin Zhang, Tomás Vinar, Webb Miller: CAGE: Combinatorial Analysis of Gene-Cluster Evolution. Journal of Computational Biology 17(9): 1227-1242 (2010)

Tomás Vinar, Brona Brejová, Giltae Song, Adam C. Siepel: Reconstructing Histories of Complex Gene Clusters on a Phylogeny. Journal of Computational Biology 17(9): 1267-1279 (2010)

Michal Nánási, Tomás Vinar, Brona Brejová: The Highest Expected Reward Decoding for HMMs with Application to Recombination Detection. CPM 2010: 164-176

Martina Visnovská, Michal Nánási, Tomás Vinar, Brona Brejová: Estimating effective DNA database size via compression. ITAT 2010: 63-70

Michal Nánási, Tomás Vinar, Brona Brejová: The Highest Expected Reward Decoding for HMMs with Application to Recombination Detection. CoRR abs/1001.4499 (2010)

Yu Zhang, Giltae Song, Tomás Vinar, Eric D. Green, Adam C. Siepel, Webb Miller: Evolutionary History Reconstruction for Mammalian Complex Gene Clusters. Journal of Computational Biology 16(8): 1051-1070 (2009)

Giltae Song, Louxin Zhang, Tomás Vinar, Webb Miller: Inferring the Recent Duplication History of a Gene Cluster. RECOMB-CG 2009: 111-125

Tomás Vinar, Brona Brejová, Giltae Song, Adam C. Siepel: Reconstructing Histories of Complex Gene Clusters on a Phylogeny. RECOMB-CG 2009: 150-163

Jakub Kovác, Tomás Vinar, Brona Brejová: Predicting Gene Structures from Multiple RT-PCR Tests. WABI 2009: 181-193

Tomás Vinar, Brona Brejová, Giltae Song, Adam C. Siepel: Bayesian History Reconstruction of Complex Human Gene Clusters on a Phylogeny. CoRR abs/0906.2635 (2009)

Yu Zhang, Giltae Song, Tomás Vinar, Eric D. Green, Adam C. Siepel, Webb Miller: Reconstructing the Evolutionary History of Complex Human Gene Clusters. RECOMB 2008: 29-49

Brona Brejová, Daniel G. Brown, Tomás Vinar: The most probable annotation problem in HMMs and its application to bioinformatics. J. Comput. Syst. Sci. 73(7): 1060-1077 (2007)

Xuefeng Cui, Tomás Vinar, Brona Brejová, Dennis Shasha, Ming Li: Homology search for genes. ISMB/ECCB (Supplement of Bioinformatics) 2007: 97-103

Rastislav Srámek, Brona Brejová, Tomás Vinar: On-Line Viterbi Algorithm for Analysis of Long Biological Sequences. WABI 2007: 240-251

Rastislav Srámek, Brona Brejová, Tomás Vinar: On-line Viterbi Algorithm and Its Relationship to Random Walks. CoRR abs/0704.0062 (2007)

Brona Brejová, Daniel G. Brown, Ian M. Harrower, Tomás Vinar: New Bounds for Motif Finding in Strong Instances. CPM 2006: 94-105

Brona Brejová, Daniel G. Brown, Tomás Vinar: Vector seeds: An extension to spaced seeds. J. Comput. Syst. Sci. 70(3): 364-380 (2005)

Brona Brejová, Daniel G. Brown, Ian M. Harrower, Alejandro López-Ortiz, Tomás Vinar: Sharper Upper and Lower Bounds for an Approximation Scheme for Consensus-Pattern. CPM 2005: 1-10

Brona Brejová, Daniel G. Brown, Ming Li, Tomás Vinar: ExonHunter: a comprehensive approach to gene finding. ISMB (Supplement of Bioinformatics) 2005: 57-65

Brona Brejová, Daniel G. Brown, Tomás Vinar: Optimal Spaced Seeds for Homologous Coding Regions. J. Bioinformatics and Computational Biology 1(4): 595-610 (2004)

Therese C. Biedl, Brona Brejová, Erik D. Demaine, Angèle M. Hamel, Alejandro López-Ortiz, Tomás Vinar: Finding hidden independent sets in interval graphs. Theor. Comput. Sci. 310(1-3): 287-307 (2004)

Brona Brejová, Daniel G. Brown, Tomás Vinar: The Most Probable Labeling Problem in HMMs and Its Application to Bioinformatics. WABI 2004: 426-437

Therese C. Biedl, Jonathan F. Buss, Erik D. Demaine, Martin L. Demaine, Mohammad Taghi Hajiaghayi, Tomás Vinar: Palindrome recognition using a multidimensional tape. Theor. Comput. Sci. 302(1-3): 475-480 (2003)

Therese C. Biedl, Brona Brejová, Erik D. Demaine, Angèle M. Hamel, Alejandro López-Ortiz, Tomás Vinar: Finding Hidden Independent Sets in Interval Graphs. COCOON 2003: 182-191

Brona Brejová, Daniel G. Brown, Tomás Vinar: Optimal Spaced Seeds for Hidden Markov Models, with Application to Homologous Coding Regions. CPM 2003: 42-54

Brona Brejová, Daniel G. Brown, Tomás Vinar: Vector Seeds: An Extension to Spaced Seeds Allows Substantial Improvements in Sensitivity and Specifity. WABI 2003: 39-54

Brona Brejová, Daniel G. Brown, Tomás Vinar: Optimal DNA Signal Recognition Models with a Fixed Amount of Intrasignal Dependency. WABI 2003: 78-94

Therese C. Biedl, Masud Hasan, Joseph Douglas Horton, Alejandro López-Ortiz, Tomás Vinar: Searching for the center of a circle. CCCG 2002: 137-141

Brona Brejová, Tomás Vinar: A Better Method for Length Distribution Modeling in HMMs and Its Application to Gene Finding. CPM 2002: 190-202

Therese C. Biedl, Brona Brejová, Tomás Vinar: Simplifying Flow Networks. MFCS 2000: 192-201