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 | 2013 | |
|---|---|---|
| i1 |      | Yannis Pantazis, Markos A. Katsoulakis, Dionisios G. Vlachos: Parametric Sensitivity Analysis for Biochemical Reaction Networks based on Pathwise Information Theory. CoRR abs/1304.3962 (2013) |
| 2012 | ||
| j7 | | Evangelia Kalligiannaki, Markos A. Katsoulakis, Petr Plechác, Dionisios G. Vlachos: Multilevel coarse graining and nano-pattern discovery in many particle stochastic systems. J. Comput. Physics 231(6): 2599-2620 (2012) |
| j6 | | Jacob A. McGill, Babatunde A. Ogunnaike, Dionisios G. Vlachos: Efficient gradient estimation using finite differencing and likelihood ratios for kinetic Monte Carlo simulations. J. Comput. Physics 231(21): 7170-7186 (2012) |
| 2011 | ||
| j5 | | Michail Stamatakis, Dionisios G. Vlachos: Equivalence of on-lattice stochastic chemical kinetics with the well-mixed chemical master equation in the limit of fast diffusion. Computers & Chemical Engineering 35(12): 2602-2610 (2011) |
| j4 | | Nasser Mohieddin Abukhdeir, Dionisios G. Vlachos, Markos A. Katsoulakis, Michael Plexousakis: Long-time integration methods for mesoscopic models of pattern-forming systems. J. Comput. Physics 230(14): 5704-5715 (2011) |
| 2010 | ||
| j3 | | Stuart Collins, Michail Stamatakis, Dionisios G. Vlachos: Adaptive coarse-grained Monte Carlo simulation of reaction and diffusion dynamics in heterogeneous plasma membranes. BMC Bioinformatics 11: 218 (2010) |
| c1 | | Lifan Xu, Michela Taufer, Stuart Collins, Dionisios G. Vlachos: Parallelization of tau-leap coarse-grained Monte Carlo simulations on GPUs. IPDPS 2010: 1-9 |
| 2007 | ||
| j2 | | Asawari Samant, Babatunde A. Ogunnaike, Dionisios G. Vlachos: A hybrid multiscale Monte Carlo algorithm (HyMSMC) to cope with disparity in time scales and species populations in intracellular networks. BMC Bioinformatics 8 (2007) |
| 2005 | ||
| j1 | | Abhijit Chatterjee, Kapil Mayawala, Jeremy S. Edwards, Dionisios G. Vlachos: Time accelerated Monte Carlo simulations of biological networks using the binomial r-leap method. Bioinformatics 21(9): 2136-2137 (2005) |
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