David L. Wild

Nikolas S. Burkoff, Csilla Várnai, David L. Wild: Predicting protein β-sheet contacts using a maximum entropy-based correlated mutation measure. Bioinformatics 29(5): 580-587 (2013)

Christopher A. Penfold, Vicky Buchanan-Wollaston, Katherine J. Denby, David L. Wild: Nonparametric Bayesian inference for perturbed and orthologous gene regulatory networks. Bioinformatics 28(12): 233-241 (2012)

Paul D. W. Kirk, Jim E. Griffin, Richard S. Savage, Zoubin Ghahramani, David L. Wild: Bayesian correlated clustering to integrate multiple datasets. Bioinformatics 28(24): 3290-3297 (2012)

Emma J. Cooke, Richard S. Savage, Paul D. W. Kirk, Robert Darkins, David L. Wild: Bayesian hierarchical clustering for microarray time series data with replicates and outlier measurements. BMC Bioinformatics 12: 399 (2011)

Richard S. Savage, Zoubin Ghahramani, Jim E. Griffin, Bernard J. de la Cruz, David L. Wild: Discovering transcriptional modules by Bayesian data integration. Bioinformatics [ISMB] 26(12): 158-167 (2010)

Oliver Stegle, Katherine J. Denby, Emma J. Cooke, David L. Wild, Zoubin Ghahramani, Karsten M. Borgwardt: A Robust Bayesian Two-Sample Test for Detecting Intervals of Differential Gene Expression in Microarray Time Series. Journal of Computational Biology 17(3): 355-367 (2010)

Richard S. Savage, Katherine A. Heller, Yang Xu, Zoubin Ghahramani, William M. Truman, Murray Grant, Katherine J. Denby, David L. Wild: R/BHC: fast Bayesian hierarchical clustering for microarray data. BMC Bioinformatics 10 (2009)

Mansoor A. S. Saqi, Richard J. B. Dobson, Preben Kraben, David A. Hodgson, David L. Wild: An approach to pathway reconstruction using whole genome metabolic models and sensitive sequence searching. J. Integrative Bioinformatics 6(1) (2009)

Carl Edward Rasmussen, Bernard J. de la Cruz, Zoubin Ghahramani, David L. Wild: Modeling and Visualizing Uncertainty in Gene Expression Clusters Using Dirichlet Process Mixtures. IEEE/ACM Trans. Comput. Biology Bioinform. 6(4): 615-628 (2009)

Oliver Stegle, Katherine J. Denby, David L. Wild, Stuart McHattie, Andrew Meade, Zoubin Ghahramani, Karsten M. Borgwardt: Discovering Temporal Patterns of Differential Gene Expression in Microarray Time Series. GCB 2009: 133-142

Oliver Stegle, Katherine J. Denby, David L. Wild, Zoubin Ghahramani, Karsten M. Borgwardt: A Robust Bayesian Two-Sample Test for Detecting Intervals of Differential Gene Expression in Microarray Time Series. RECOMB 2009: 201-216

Alexei A. Podtelezhnikov, David L. Wild: CRANKITE: A fast polypeptide backbone conformation sampler. Source Code for Biology and Medicine 3 (2008)

Wei Chu, Zoubin Ghahramani, Alexei A. Podtelezhnikov, David L. Wild: Bayesian Segmental Models with Multiple Sequence Alignment Profiles for Protein Secondary Structure and Contact Map Prediction. IEEE/ACM Trans. Comput. Biology Bioinform. 3(2): 98-113 (2006)

Wei Chu, Zoubin Ghahramani, Roland Krause, David L. Wild: Identifying Protein Complexes in High-Throughput Protein Interaction Screens Using an Infinite Latent Feature Model. Pacific Symposium on Biocomputing 2006: 231-242

Matthew J. Beal, Francesco Falciani, Zoubin Ghahramani, Claudia Rangel, David L. Wild: A Bayesian approach to reconstructing genetic regulatory networks with hidden factors. Bioinformatics 21(3): 349-356 (2005)

Wei Chu, Zoubin Ghahramani, Francesco Falciani, David L. Wild: Biomarker discovery in microarray gene expression data with Gaussian processes. Bioinformatics 21(16): 3385-3393 (2005)

Claudia Rangel, John Angus, Zoubin Ghahramani, Maria Lioumi, Elizabeth Sotheran, Alessia Gaiba, David L. Wild, Francesco Falciani: Modeling T-cell activation using gene expression profiling and state-space models. Bioinformatics 20(9): 1361-1372 (2004)

Wei Chu, Zoubin Ghahramani, David L. Wild: Protein secondary structure prediction using sigmoid belief networks to parameterize segmental semi-Markov models. ESANN 2004: 81-86

Wei Chu, Zoubin Ghahramani, David L. Wild: A graphical model for protein secondary structure prediction. ICML 2004

Philip E. Bourne, C. K. J. Allerston, Werner G. Krebs, Wilfred W. Li, Ilya N. Shindyalov, Adam Godzik, Iddo Friedberg, Tong Liu, David L. Wild, Seungwoo Hwang, Zoubin Ghahramani, Li Chen, John D. Westbrook: The Status of Structural Genomics Defined Through the Analysis of Current Targets and Structures. Pacific Symposium on Biocomputing 2004: 375-386

Ananya Dubey, Seungwoo Hwang, Claudia Rangel, Carl Edward Rasmussen, Zoubin Ghahramani, David L. Wild: Clustering Protein Sequence and Structure Space with Infinite Gaussian Mixture Models. Pacific Symposium on Biocomputing 2004: 399-410

A. Raval, Zoubin Ghahramani, David L. Wild: A Bayesian network model for protein fold and remote homologue recognition. Bioinformatics 18(6): 788-801 (2002)

Mansoor A. S. Saqi, David L. Wild, M. J. Hartshorn: Protein analyst - a distributed object environment for protein sequence and structure analysis. Bioinformatics 15(6): 521-522 (1999)