Ryo Yoshida

Shuichi Kawano, Teppei Shimamura, Atsushi Niida, Seiya Imoto, Rui Yamaguchi, Masao Nagasaki, Ryo Yoshida, Cristin G. Print, Satoru Miyano: Identifying Gene Pathways Associated with Cancer Characteristics via Sparse Statistical Methods. IEEE/ACM Trans. Comput. Biology Bioinform. 9(4): 966-972 (2012)

Yoshinori Tamada, Rui Yamaguchi, Seiya Imoto, Osamu Hirose, Ryo Yoshida, Masao Nagasaki, Satoru Miyano: SiGN-SSM: open source parallel software for estimating gene networks with state space models. Bioinformatics 27(8): 1172-1173 (2011)

Ryo Yoshida, Masaya M. Saito, Hiromichi Nagao, Tomoyuki Higuchi: Bayesian experts in exploring reaction kinetics of transcription circuits. Bioinformatics 26(18) (2010)

Ryo Yoshida, Mike West: Bayesian Learning in Sparse Graphical Factor Models via Variational Mean-Field Annealing. Journal of Machine Learning Research 11: 1771-1798 (2010)

Shuichi Kawano, Teppei Shimamura, Atsushi Niida, Seiya Imoto, Rui Yamaguchi, Masao Nagasaki, Ryo Yoshida, Cristin G. Print, Satoru Miyano: Discovering functional gene pathways associated with cancer heterogeneity via sparse supervised learning. BIBM 2010: 253-258

Yusuke Hara, Shingo Maeda, Ryo Yoshida, Shuji Hashimoto: Development of novel self-oscillating molecular robot fueled by organic acid. IROS 2009: 2223-2227

Shingo Maeda, Yusuke Hara, Ryo Yoshida, Shuji Hashimoto: Chemical robot-design of peristaltic polymer gel actuator-. IROS 2009: 4325-4330

Kazuyuki Nakamura, Ryo Yoshida, Masao Nagasaki, Satoru Miyano, Tomoyuki Higuchi: Parameter Estimation of In Silico Biological Pathways with Particle Filtering Towards a Petascale Computing. Pacific Symposium on Biocomputing 2009: 227-238

Shingo Maeda, Yusuke Hara, Ryo Yoshida, Shuji Hashimoto: Self-Oscillating Gel Actuator for Chemical Robotics. Advanced Robotics 22(12): 1329-1342 (2008)

Osamu Hirose, Ryo Yoshida, Seiya Imoto, Rui Yamaguchi, Tomoyuki Higuchi, Stephen D. Charnock-Jones, Cristin G. Print, Satoru Miyano: Statistical inference of transcriptional module-based gene networks from time course gene expression profiles by using state space models. Bioinformatics 24(7): 932-942 (2008)

Ryo Yoshida, Masao Nagasaki, Rui Yamaguchi, Seiya Imoto, Satoru Miyano, Tomoyuki Higuchi: Bayesian learning of biological pathways on genomic data assimilation. Bioinformatics 24(22): 2592-2601 (2008)

Kazuyuki Numata, Ryo Yoshida, Masao Nagasaki, Ayumu Saito, Seiya Imoto, Satoru Miyano: ExonMiner: Web service for analysis of GeneChip Exon array data. BMC Bioinformatics 9 (2008)

Osamu Hirose, Ryo Yoshida, Rui Yamaguchi, Seiya Imoto, Tomoyuki Higuchi, Satoru Miyano: Analyzing Time Course Gene Expression Data with Biological and Technical Replicates to Estimate Gene Networks by State Space Models. Asia International Conference on Modelling and Simulation 2008: 940-946

Ryo Yoshida, Michiaki Yasumura: A New Cell Phone Remote Control for People with Visual Impairment. ICCHP 2008: 1145-1152

Ryo Yoshida, Kazuyuki Numata, Seiya Imoto, Masao Nagasaki, Atsushi Doi, Kazuko Ueno, Satoru Miyano: Computational Genome-Wide Discovery of Aberrant Splice Variations with Exon Expression Profiles. BIBE 2007: 715-722

Shingo Maeda, Yusuke Hara, Ryo Yoshida, Shuji Hashimoto: Chemical robot - Design of self-walking gel. IROS 2007: 2150-2155

Pramod K. Gupta, Ryo Yoshida, Seiya Imoto, Rui Yamaguchi, Satoru Miyano: Statistical Absolute Evaluation of Gene Ontology Terms with Gene Expression Data. ISBRA 2007: 146-157

Ryo Yoshida, Tomoyuki Higuchi, Seiya Imoto, Satoru Miyano: ArrayCluster: an analytic tool for clustering, data visualization and module finder on gene expression profiles. Bioinformatics 22(12): 1538-1539 (2006)

Michiaki Yasumura, Ryo Yoshida, Megumi Yoshida: Prototyping and Evaluation of New Remote Controls for People with Visual Impairment. ICCHP 2006: 461-468

Ryo Yoshida, Seiya Imoto, Tomoyuki Higuchi: Estimating Time-Dependent Gene Networks from Time Series Microarray Data by Dynamic Linear Models with Markov Switching. CSB 2005: 289-298

Ryo Yoshida, Seiya Imoto, Tomoyuki Higuchi: A Penalized Likelihood Estimation on Transcriptional Module-Based Clustering. ICCSA (3) 2005: 389-401

Ryo Yoshida, Tomoyuki Higuchi, Seiya Imoto: A Mixed Factors Model for Dimension Reduction and Extraction of a Group Structure in Gene Expression Data. CSB 2004: 161-172

Ryo Yoshida, Takaaki Murao, Tatsuo Miyazawa: 3D web environment for knowledge management. Future Generation Comp. Syst. 17(1): 73-78 (2000)

Ryutarou Ohbuchi, Tatsuo Miyazawa, Masaki Aono, Akio Koide, Masahiko Kimura, Ryo Yoshida: Integrated medical-image system for cancer research and treatment. IBM Journal of Research and Development 40(2): 185-210 (1996)