Paul A. Yushkevich

Hongzhi Wang, Jung Wook Suh, Sandhitsu R. Das, John Pluta, Caryne Craige, Paul A. Yushkevich: Multi-Atlas Segmentation with Joint Label Fusion. IEEE Trans. Pattern Anal. Mach. Intell. 35(3): 611-623 (2013)

Sandhitsu R. Das, Brian B. Avants, John Pluta, Hongzhi Wang, Jung Wook Suh, Michael W. Weiner, Susanne G. Mueller, Paul A. Yushkevich: Measuring longitudinal change in the hippocampal formation from in vivo high-resolution T2-weighted MRI. NeuroImage 60(2): 1266-1279 (2012)

Hongzhi Wang, Paul A. Yushkevich: Spatial bias in multi-atlas based segmentation. CVPR 2012: 909-916

Paul A. Yushkevich, Hongzhi Wang, John Pluta, Brian B. Avants: From label fusion to correspondence fusion: A new approach to unbiased groupwise registration. CVPR 2012: 956-963

Daniel H. Adler, Alex Yang Liu, John Pluta, Salmon Kadivar, Sylvia Orozco, Hongzhi Wang, James C. Gee, Brian B. Avants, Paul A. Yushkevich: Reconstruction of the human hippocampus in 3D from histology and high-resolution ex-vivo MRI. ISBI 2012: 294-297

Hongzhi Wang, Paul A. Yushkevich: Dependency prior for multi-atlas label fusion. ISBI 2012: 892-895

Hongzhi Wang, Paul A. Yushkevich: Guiding Automatic Segmentation with Multiple Manual Segmentations. MICCAI (2) 2012: 429-436

Hongzhi Wang, Sandhitsu R. Das, Jung Wook Suh, Murat Altinay, John Pluta, Caryne Craige, Brian B. Avants, Paul A. Yushkevich: A learning-based wrapper method to correct systematic errors in automatic image segmentation: Consistently improved performance in hippocampus, cortex and brain segmentation. NeuroImage 55(3): 968-985 (2011)

Sandhitsu R. Das, Dawn Mechanic-Hamilton, John Pluta, Marc Korczykowski, John A. Detre, Paul A. Yushkevich: Heterogeneity of functional activation during memory encoding across hippocampal subfields in temporal lobe epilepsy. NeuroImage 58(4): 1121-1130 (2011)

Hongzhi Wang, Jung Wook Suh, Sandhitsu R. Das, John Pluta, Murat Altinay, Paul A. Yushkevich: Regression-based label fusion for multi-atlas segmentation. CVPR 2011: 1113-1120

Hongzhi Wang, Jung Wook Suh, John Pluta, Murat Altinay, Paul A. Yushkevich: Optimal Weights for Multi-atlas Label Fusion. IPMI 2011: 73-84

Hongzhi Wang, Jung Wook Suh, Sandhitsu R. Das, Murat Altinay, John Pluta, Paul A. Yushkevich: Hippocampus segmentation using a stable maximum likelihood classifier ensemble algorithm. ISBI 2011: 2036-2040

Hui Zhang, Suyash P. Awate, Sandhitsu R. Das, John H. Woo, Elias R. Melhem, James C. Gee, Paul A. Yushkevich: A tract-specific framework for white matter morphometry combining macroscopic and microscopic tract features. Medical Image Analysis 14(5): 666-673 (2010)

Brian B. Avants, Paul A. Yushkevich, John Pluta, David Minkoff, Marc Korczykowski, John A. Detre, James C. Gee: The optimal template effect in hippocampus studies of diseased populations. NeuroImage 49(3): 2457-2466 (2010)

Paul A. Yushkevich, Brian B. Avants, Sandhitsu R. Das, John Pluta, Murat Altinay, Caryne Craige: Bias in estimation of hippocampal atrophy using deformation-based morphometry arises from asymmetric global normalization: An illustration in ADNI 3 T MRI data. NeuroImage 50(2): 434-445 (2010)

Suyash P. Awate, Paul A. Yushkevich, Zhuang Song, Daniel J. Licht, James C. Gee: Cerebral cortical folding analysis with multivariate modeling and testing: Studies on gender differences and neonatal development. NeuroImage 53(2): 450-459 (2010)

Paul A. Yushkevich, Hongzhi Wang, John Pluta, Sandhitsu R. Das, Caryne Craige, Brian B. Avants, Michael W. Weiner, Susanne G. Mueller: Nearly automatic segmentation of hippocampal subfields in in vivo focal T2-weighted MRI. NeuroImage 53(4): 1208-1224 (2010)

Nicholas J. Tustison, Brian B. Avants, Philip A. Cook, Yuanjie Zheng, Alexander Egan, Paul A. Yushkevich, James C. Gee: N4ITK: Improved N3 Bias Correction. IEEE Trans. Med. Imaging 29(6): 1310-1320 (2010)

Hongzhi Wang, Sandhitsu R. Das, John Pluta, Caryne Craige, Murat Altinay, Michael Weiner, Susanne G. Mueller, Paul A. Yushkevich: Shape-based semi-automatic hippocampal subfield segmentation with learning-based bias removal. ISBI 2010: 424-427

Hongzhi Wang, Sandhitsu R. Das, John Pluta, Caryne Craige, Murat Altinay, Brian B. Avants, Michael Weiner, Susanne G. Mueller, Paul A. Yushkevich: Standing on the Shoulders of Giants: Improving Medical Image Segmentation via Bias Correction. MICCAI (3) 2010: 105-112

Hui Sun, Alejandro F. Frangi, Hongzhi Wang, Federico Sukno, Catalina Tobon-Gomez, Paul A. Yushkevich: Automatic Cardiac MRI Segmentation Using a Biventricular Deformable Medial Model. MICCAI (1) 2010: 468-475

Hui Zhang, Paul A. Yushkevich, Daniel Rueckert, James C. Gee: A Computational White Matter Atlas for Aging with Surface-Based Representation of Fasciculi. WBIR 2010: 83-90

Paul A. Yushkevich, Brian B. Avants, John Pluta, Sandhitsu R. Das, David Minkoff, Dawn Mechanic-Hamilton, Simon Glynn, Stephen Pickup, Weixia Liu, James C. Gee, Murray Grossman, John A. Detre: A high-resolution computational atlas of the human hippocampus from postmortem magnetic resonance imaging at 9.4 T. NeuroImage 44(2): 385-398 (2009)

Suyash P. Awate, Paul A. Yushkevich, Zhuang Song, Daniel J. Licht, James C. Gee: Multivariate High-Dimensional Cortical Folding Analysis, Combining Complexity and Shape, in Neonates with Congenital Heart Disease. IPMI 2009: 552-563

Hui Sun, Catalina Tobon-Gomez, Sandhitsu R. Das, Marina Huguet, Paul A. Yushkevich, Alejandro F. Frangi: Ventricular Wall Thickness Analysis in Acute Myocardial Infarction and Hypertrophic Cardiomyopathy. ISBI 2009: 670-673

Hui Zhang, Suyash P. Awate, Sandhitsu R. Das, John H. Woo, Elias R. Melhem, James C. Gee, Paul A. Yushkevich: A Tract-Specific Framework for White Matter Morphometry Combining Macroscopic and Microscopic Tract Features. MICCAI (1) 2009: 141-149

Suyash P. Awate, Paul A. Yushkevich, Daniel J. Licht, James C. Gee: Gender Differences in Cerebral Cortical Folding: Multivariate Complexity-Shape Analysis with Insights into Handling Brain-Volume Differences. MICCAI (1) 2009: 200-207

Hui Zhang, Paul A. Yushkevich, Daniel Rueckert, James C. Gee: Tensor-Based Morphometry of Fibrous Structures with Application to Human Brain White Matter. MICCAI (1) 2009: 466-473

Paul A. Yushkevich, Hui Zhang, Tony J. Simon, James C. Gee: Structure-specific statistical mapping of white matter tracts. NeuroImage 41(2): 448-461 (2008)

Paul A. Yushkevich, Brian B. Avants, John Pluta, David Minkoff, Stephen Pickup, Weixia Liu, John A. Detre, Murray Grossman, James C. Gee: Building an atlas of hippocampal subfields using postmortem MRI. ISBI 2008: 161-164

Sandhitsu R. Das, Dawn Mechanic-Hamilton, Marc Korczykowski, Brian B. Avants, John A. Detre, James C. Gee, Paul A. Yushkevich: Spatial correspondence based asymmetry analysis in FMRI. ISBI 2008: 616-619

Hui Zhang, Paul A. Yushkevich, Tony J. Simon, James C. Gee: Surface-based modeling of white matter fasciculi with orientation encoding. ISBI 2008: 708-711

Hui Sun, Brian B. Avants, Alejandro F. Frangi, Sebastián Ordas, James C. Gee, Paul A. Yushkevich: Branching medial models for cardiac shape representation. ISBI 2008: 1485-1488

Paul A. Yushkevich, Brian B. Avants, John Pluta, David Minkoff, John A. Detre, Murray Grossman, James C. Gee: Shape-Based Alignment of Hippocampal Subfields: Evaluation in Postmortem MRI. MICCAI (1) 2008: 510-517

Suyash P. Awate, Lawrence Win, Paul A. Yushkevich, Robert T. Schultz, James C. Gee: 3D Cerebral Cortical Morphometry in Autism: Increased Folding in Children and Adolescents in Frontal, Parietal, and Temporal Lobes. MICCAI (1) 2008: 559-567

Hui Sun, Brian B. Avants, Alejandro F. Frangi, Federico Sukno, James C. Gee, Paul A. Yushkevich: Cardiac Medial Modeling and Time-Course Heart Wall Thickness Analysis. MICCAI (2) 2008: 766-773

Lydia Ng, Sayan D. Pathak, Chihchau Kuan, Christopher Lau, Hong-wei Dong, Andrew Sodt, Chinh Dang, Brian B. Avants, Paul A. Yushkevich, James C. Gee, David R. Haynor, Ed Lein, Allan Jones, Michael Hawrylycz: Neuroinformatics for Genome-Wide 3-D Gene Expression Mapping in the Mouse Brain. IEEE/ACM Trans. Comput. Biology Bioinform. 4(3): 382-393 (2007)

Hui Sun, Paul A. Yushkevich, Hui Zhang, Philip A. Cook, Jeffrey T. Duda, Tony J. Simon, James C. Gee: Shape-Based Normalization of the Corpus Callosum for DTI Connectivity Analysis. IEEE Trans. Med. Imaging 26(9): 1166-1178 (2007)

Hui Zhang, Brian B. Avants, Paul A. Yushkevich, John H. Woo, Sumei Wang, L. F. McCluskey, L. B. Elman, Elias R. Melhem, James C. Gee: High-Dimensional Spatial Normalization of Diffusion Tensor Images Improves the Detection of White Matter Differences: An Example Study Using Amyotrophic Lateral Sclerosis. IEEE Trans. Med. Imaging 26(11): 1585-1597 (2007)

Paul A. Yushkevich, Hui Zhang, Tony J. Simon, James C. Gee: Structure-Specific Statistical Mapping of White Matter Tracts using the Continuous Medial Representation. ICCV 2007: 1-8

Paul A. Yushkevich, John A. Detre, James C. Gee: Non-Uniform Smoothing in Hippocampus-Specific Group Fmri Analysis. ISBI 2007: 420-423

Hui Zhang, Paul A. Yushkevich, Daniel Rueckert, James C. Gee: Unbiased White Matter Atlas Construction Using Diffusion Tensor Images. MICCAI (2) 2007: 211-218

Hui Sun, Paul A. Yushkevich, Hui Zhang, Philip A. Cook, Jeffrey T. Duda, Tony J. Simon, James C. Gee: Evaluation of Shape-Based Normalization in the Corpus Callosum for White Matter Connectivity Analysis. MICCAI (2) 2007: 777-784

Hui Zhang, Paul A. Yushkevich, Daniel C. Alexander, James C. Gee: Deformable registration of diffusion tensor MR images with explicit orientation optimization. Medical Image Analysis 10(5): 764-785 (2006)

Paul A. Yushkevich, Hui Zhang, James C. Gee: Continuous Medial Representation for Anatomical Structures. IEEE Trans. Med. Imaging 25(12): 1547-1564 (2006)

Paul A. Yushkevich, John A. Detre, Kathy Z. Tang, Angela Hoang, Dawn Mechanic-Hamilton, María A. Fernández-Seara, Marc Korczykowski, Hui Zhang, James C. Gee: Hippocampus-Specific fMRI Group Activation Analysis with Continuous M-Reps. MICCAI (2) 2006: 284-291

Paul A. Yushkevich, Brian B. Avants, Lydia Ng, Michael Hawrylycz, Pablo D. Burstein, Hui Zhang, James C. Gee: 3D Mouse Brain Reconstruction from Histology Using a Coarse-to-Fine Approach. WBIR 2006: 230-237

Paul A. Yushkevich, Hui Zhang, James C. Gee: Parametric Medial Shape Representation in 3-D via the Poisson Partial Differential Equation with Non-linear Boundary Conditions. IPMI 2005: 162-173

Philip A. Cook, Hui Zhang, Brian B. Avants, Paul A. Yushkevich, Daniel C. Alexander, James C. Gee, O. Ciccarelli, A. J. Thompson: An Automated Approach to Connectivity-Based Partitioning of Brain Structures. MICCAI 2005: 164-171

Hui Zhang, Paul A. Yushkevich, James C. Gee: Deformable Registration of Diffusion Tensor MR Images with Explicit Orientation Optimization. MICCAI 2005: 172-179

Paul A. Yushkevich, Hui Zhang, James C. Gee: Statistical Modeling of Shape and Appearance Using the Continuous Medial Representation. MICCAI (2) 2005: 725-732

Hui Zhang, Paul A. Yushkevich, James C. Gee: Registration of Diffusion Tensor Images. CVPR (1) 2004: 842-847

Hui Zhang, Paul A. Yushkevich, James C. Gee: Towards Diffusion Profile Image Registration. ISBI 2004: 324-327

Abraham Dubb, Paul A. Yushkevich, Zhiyong Xie, Ruben C. Gur, Raquel E. Gur, James C. Gee: Regional Structural Characterization of the Brain of Schizophrenia Patients. MICCAI (2) 2004: 688-695

Stephen M. Pizer, P. Thomas Fletcher, Sarang C. Joshi, Andrew Thall, James Z. Chen, Yonatan Fridman, Daniel S. Fritsch, A. Graham Gash, John M. Glotzer, Michael R. Jiroutek, Conglin Lu, Keith E. Muller, Gregg Tracton, Paul A. Yushkevich, Edward L. Chaney: Deformable M-Reps for 3D Medical Image Segmentation. International Journal of Computer Vision 55(2-3): 85-106 (2003)

Paul A. Yushkevich, P. Thomas Fletcher, Sarang C. Joshi, Andrew Thall, Stephen M. Pizer: Continuous medial representations for geometric object modeling in 2D and 3D. Image Vision Comput. 21(1): 17-27 (2003)

Paul A. Yushkevich, Sarang C. Joshi, Stephen M. Pizer, John G. Csernansky, Lei E. Wang: Feature Selection for Shape-Based Classification of Biological Objects. IPMI 2003: 114-125

Sarang C. Joshi, Stephen M. Pizer, P. Thomas Fletcher, Paul A. Yushkevich, Andrew Thall, J. S. Marron: Multi-scale Deformable Model Segmentation and Statistical Shape Analysis Using Medial Descriptions. IEEE Trans. Med. Imaging 21(5): 538-550 (2002)

Paul A. Yushkevich, Stephen M. Pizer, Sarang C. Joshi, J. S. Marron: Intuitive, Localized Analysis of Shape Variability. IPMI 2001: 402-408

Stephen M. Pizer, Daniel S. Fritsch, Paul A. Yushkevich, Valen E. Johnson, Edward L. Chaney: Segmentation, Registration and Measurement of Shape Variation via Image Object Shape. IEEE Trans. Med. Imaging 18(10): 851-865 (1999)