Federico Zambelli

Federico Zambelli, Graziano Pesole, Giulio Pavesi: Motif discovery and transcription factor binding sites before and after the next-generation sequencing era. Briefings in Bioinformatics 14(2): 225-237 (2013)

Matteo Giulietti, Francesco Piva, Mattia D'Antonio, Paolo D'Onorio De Meo, Daniele Paoletti, Tiziana Castrignanò, Anna Maria D'Erchia, Ernesto Picardi, Federico Zambelli, Giovanni Principato, Giulio Pavesi, Graziano Pesole: SpliceAid-F: a database of human splicing factors and their RNA-binding sites. Nucleic Acids Research 41(Database-Issue): 125-131 (2013)

Federico Zambelli, Gian Marco Prazzoli, Graziano Pesole, Giulio Pavesi: Cscan: finding common regulators of a set of genes by using a collection of genome-wide ChIP-seq datasets. Nucleic Acids Research 40(Web-Server-Issue): 510-515 (2012)

Pier Luigi Martelli, Mattia D'Antonio, Paola Bonizzoni, Tiziana Castrignanò, Anna Maria D'Erchia, Paolo D'Onorio De Meo, Piero Fariselli, Michele Finelli, Flavio Licciulli, Marina Mangiulli, Flavio Mignone, Giulio Pavesi, Ernesto Picardi, Raffaella Rizzi, Ivan Rossi, Alessio Valletti, Andrea Zauli, Federico Zambelli, Rita Casadio, Graziano Pesole: ASPicDB: a database of annotated transcript and protein variants generated by alternative splicing. Nucleic Acids Research 39(Database-Issue): 80-85 (2011)

Federico Zambelli, Graziano Pesole, Giulio Pavesi: Pscan: finding over-represented transcription factor binding site motifs in sequences from co-regulated or co-expressed genes. Nucleic Acids Research 37(Web-Server-Issue): 247-252 (2009)

Giulio Pavesi, Federico Zambelli, Graziano Pesole: WeederH: an algorithm for finding conserved regulatory motifs and regions in homologous sequences. BMC Bioinformatics 8 (2007)

Giulio Pavesi, Federico Zambelli: Prediction of over Represented Transcription Factor Binding Sites in Co-regulated Genes Using Whole Genome Matching Statistics. WILF 2007: 651-658

Giulio Pavesi, Paolo Mereghetti, Federico Zambelli, Marco Stefani, Giancarlo Mauri, Graziano Pesole: MoD Tools: regulatory motif discovery in nucleotide sequences from co-regulated or homologous genes. Nucleic Acids Research 34(Web-Server-Issue): 566-570 (2006)