Adam Zemla

Adam Zemla, Dorothy M. Lang, Tanya Kostova, Raul Andino, Carol L. Ecale Zhou: StralSV: assessment of sequence variability within similar 3D structures and application to polio RNA-dependent RNA polymerase. BMC Bioinformatics 12: 226 (2011)

Alexis P. Yelton, Brian C. Thomas, Sheri L. Simmons, Paul Wilmes, Adam Zemla, Michael P. Thelen, Nicholas Justice, Jillian F. Banfield: A Semi-Quantitative, Synteny-Based Method to Improve Functional Predictions for Hypothetical and Poorly Annotated Bacterial and Archaeal Genes. PLoS Computational Biology 7(10) (2011)

Anu Chakicherla, Carol L. Ecale Zhou, Martha Ligon Dang, Virginia Rodriguez, J. Norman Hansen, Adam Zemla: SpaK/SpaR Two-component System Characterized by a Structure-driven Domain-fusion Method and in Vitro Phosphorylation Studies. PLoS Computational Biology 5(6) (2009)

Carol L. Ecale Zhou, Jason Smith, Marisa Lam, Adam Zemla, Matthew D. Dyer, Tom Slezak: MvirDB - a microbial database of protein toxins, virulence factors and antibiotic resistance genes for bio-defence applications. Nucleic Acids Research 35(Database-Issue): 391-394 (2007)

Carol L. Ecale Zhou, Marisa Lam, Jason Smith, Adam Zemla, Matthew D. Dyer, Thomas A. Kuczmarski, Elizabeth A. Vitalis, Thomas R. Slezak: MannDB - A microbial database of automated protein sequence analyses and evidence integration for protein characterization. BMC Bioinformatics 7: 459 (2006)

Carol L. Ecale Zhou, Adam Zemla, Diana C. Roe, Malin Young, Marisa Lam, Joseph S. Schoeniger, Rod Balhorn: Computational approaches for identification of conserved/unique binding pockets in the A chain of ricin. Bioinformatics 21(14): 3089-3096 (2005)

Adam Zemla, Carol L. Ecale Zhou, Tom Slezak, Tom Kuczmarski, D. Rama, Clinton Torres, D. Sawicka, Daniel Barsky: AS2TS system for protein structure modeling and analysis. Nucleic Acids Research 33(Web-Server-Issue): 111-115 (2005)

Tom Slezak, Tom Kuczmarski, Linda M. Ott, Clinton Torres, Dan Medeiros, Jason Smith, Brian Truitt, Nisha Mulakken, Marisa Lam, Elizabeth A. Vitalis, Adam Zemla, Carol L. Ecale Zhou, Shea N. Gardner: Comparative Genomics Tools Applied to Bioterrorism Defence. Briefings in Bioinformatics 4(2): 133-149 (2003)

Adam Zemla: LGA: a method for finding 3D similarities in protein structures. Nucleic Acids Research 31(13): 3370-3374 (2003)

Susana Cristobal, Adam Zemla, Daniel Fischer, Leszek Rychlewski, Arne Elofsson: A study of quality measures for protein threading models. BMC Bioinformatics 2: 5 (2001)

Jack Dongarra, Jeremy Du Croz, Sven Hammarling, Jerzy Wasniewski, Adam Zemla: Lapack for Fortran90 Compiler. HPCN Europe 1996: 826-833

Jack Dongarra, Jeremy Du Croz, Sven Hammarling, Jerzy Wasniewski, Adam Zemla: A Proposal for a Fortran 90 Interface for LAPACK. PARA 1995: 158-165

Adam Zemla: Wavelet Transforms Computing on PVM. PARA 1994: 534-546