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Michael Q. Zhang
2010 – today
- 2012
[j35]Haipeng Xing, Yifan Mo, Will Liao, Michael Q. Zhang: Genome-Wide Localization of Protein-DNA Binding and Histone Modification by a Bayesian Change-Point Method with ChIP-seq Data. PLoS Computational Biology 8(7) (2012)- [c6]Michael Q. Zhang: Computational Modeling of Mammalian Promoters - (Invited Keynote Talk). ISBRA 2012: 330
- 2011
- [j34]Shu Yang, Hari Krishna Yalamanchili, Xinran Li, Kwok-Ming Yao, Pak Chung Sham, Michael Q. Zhang, Junwen Wang: Correlated evolution of transcription factors and their binding sites. Bioinformatics 27(21): 2972-2978 (2011)
- [j33]Jie Wu, Martin Akerman, Shuying Sun, W. Richard McCombie, Adrian R. Krainer, Michael Q. Zhang: SpliceTrap: a method to quantify alternative splicing under single cellular conditions. Bioinformatics 27(21): 3010-3016 (2011)
- [j32]Zhihua Zhang, Michael Q. Zhang: Histone modification profiles are predictive for tissue/cell-type specific expression of both protein-coding and microRNA genes. BMC Bioinformatics 12: 155 (2011)
- [j31]Jing Qin, Mulin Jun Li, Panwen Wang, Michael Q. Zhang, Junwen Wang: ChIP-Array: combinatory analysis of ChIP-seq/chip and microarray gene expression data to discover direct/indirect targets of a transcription factor. Nucleic Acids Research 39(Web-Server-Issue): 430-436 (2011)
- [p1]Michael Q. Zhang: Computational Promoter Prediction in a Vertebrate Genome. Handbook of Statistical Bioinformatics 2011: 73-85
- [c5]Man-Hung Eric Tang, Vinay Varadan, Sid Kamalakaran, Michael Q. Zhang, Nevenka Dimitrova, James Hicks: A method for finding novel associations between genome-wide copy number and dna methylation patterns. GENSiPS 2011: 78-82
- 2010
- [j30]Ramkrishna Mitra, Sanghamitra Bandyopadhyay, Ujjwal Maulik, Michael Q. Zhang: SFSSClass: an integrated approach for miRNA based tumor classification. BMC Bioinformatics 11(S-1): 22 (2010)
2000 – 2009
- 2009
- [j29]Andrew D. Smith, Wen-Yu Chung, Emily Hodges, Jude Kendall, Gregory J. Hannon, James Hicks, Zhenyu Xuan, Michael Q. Zhang: Updates to the RMAP short-read mapping software. Bioinformatics 25(21): 2841-2842 (2009)
- [j28]Atsushi Niida, Andrew D. Smith, Seiya Imoto, Hiroyuki Aburatani, Michael Q. Zhang, Tetsu Akiyama: Gene set-based module discovery in the breast cancer transcriptome. BMC Bioinformatics 10 (2009)
- [j27]Michael Q. Zhang, Michael S. Waterman, Xuegong Zhang: The Seventh Asia Pacific Bioinformatics Conference (APBC2009). BMC Bioinformatics 10(S-1) (2009)
- [j26]Michael Q. Zhang, Andrew D. Smith: Challenges in Understanding Genome-Wide DNA Methylation. J. Comput. Sci. Technol. 25(1): 26-34 (2009)
- 2008
- [j25]Xiaowo Wang, Jin Gu, Michael Q. Zhang, Yanda Li: Identification of phylogenetically conserved microRNA cis-regulatory elements across 12 Drosophila species. Bioinformatics 24(2): 165-171 (2008)
- [j24]Hao Lin, Zefeng Zhang, Michael Q. Zhang, Bin Ma, Ming Li: ZOOM! Zillions of oligos mapped. Bioinformatics 24(21): 2431-2437 (2008)
- [j23]Atsushi Niida, Andrew D. Smith, Seiya Imoto, Shuichi Tsutsumi, Hiroyuki Aburatani, Michael Q. Zhang, Tetsu Akiyama: Integrative bioinformatics analysis of transcriptional regulatory programs in breast cancer cells. BMC Bioinformatics 9 (2008)
- [j22]Andrew D. Smith, Zhenyu Xuan, Michael Q. Zhang: Using quality scores and longer reads improves accuracy of Solexa read mapping. BMC Bioinformatics 9 (2008)
- [j21]Gengxin Chen, Wanhe Li, Qing-Shuo Zhang, Michael Regulski, Nishi Sinha, Jody Barditch, Tim Tully, Adrian R. Krainer, Michael Q. Zhang, Josh Dubnau: Identification of Synaptic Targets of Drosophila Pumilio. PLoS Computational Biology 4(2) (2008)
- [c4]Ujjwal Maulik, Anirban Mukhopadhyay, Sanghamitra Bandyopadhyay, Michael Q. Zhang, Xuegong Zhang: Multiobjective fuzzy biclustering in microarray data: Method and a new performance measure. IEEE Congress on Evolutionary Computation 2008: 1536-1543
- 2007
- [j20]M. Juanita Martinez, Andrew D. Smith, Bilan Li, Michael Q. Zhang, Kevin S. Harrod: Computational prediction of novel components of lung transcriptional networks. Bioinformatics 23(1): 21-29 (2007)
- [j19]Jing Zhang, Bo Jiang, Ming Li, John Tromp, Xuegong Zhang, Michael Q. Zhang: Computing exact P-values for DNA motifs. Bioinformatics 23(5): 531-537 (2007)
- [j18]Bo Jiang, Michael Q. Zhang, Xuegong Zhang: OSCAR: One-class SVM for accurate recognition of cis-elements. Bioinformatics 23(21): 2823-2828 (2007)
- [j17]Dustin E. Schones, Andrew D. Smith, Michael Q. Zhang: Statistical significance of cis-regulatory modules. BMC Bioinformatics 8 (2007)
- [j16]
- [j15]C. Jiang, Zhenyu Xuan, Fang Zhao, Michael Q. Zhang: TRED: a transcriptional regulatory element database, new entries and other development. Nucleic Acids Research 35(Database-Issue): 137-140 (2007)
- [j14]Chaolin Zhang, Xuegong Zhang, Michael Q. Zhang, Yanda Li: Neighbor number, valley seeking and clustering. Pattern Recognition Letters 28(2): 173-180 (2007)
- 2006
- [j13]Fang Fang, Shicai Fan, Xuegong Zhang, Michael Q. Zhang: Predicting methylation status of CpG islands in the human brain. Bioinformatics 22(18): 2204-2209 (2006)
- [j12]Chaolin Zhang, Hai-Ri Li, Jian-Bing Fan, Jessica Wang-Rodriguez, Tracy Downs, Xiang-Dong Fu, Michael Q. Zhang: Profiling alternatively spliced mRNA isoforms for prostate cancer classification. BMC Bioinformatics 7: 202 (2006)
- [c3]Nevenka Dimitrova, Yee Him Cheung, Michael Q. Zhang: Analysis and visualization of DNA spectrograms: open possibilities for the genome research. ACM Multimedia 2006: 1017-1024
- 2005
- [j11]Pavel Sumazin, Gengxin Chen, Naoya Hata, Andrew D. Smith, Theresa Zhang, Michael Q. Zhang: DWE: Discriminating Word Enumerator. Bioinformatics 21(1): 31-38 (2005)
- [j10]Dustin E. Schones, Pavel Sumazin, Michael Q. Zhang: Similarity of position frequency matrices for transcription factor binding sites. Bioinformatics 21(3): 307-313 (2005)
- [j9]Fang Zhao, Zhenyu Xuan, Lihua Liu, Michael Q. Zhang: TRED: a Transcriptional Regulatory Element Database and a platform for in silico gene regulation studies. Nucleic Acids Research 33(Database-Issue): 103-107 (2005)
- [c2]Andrew D. Smith, Pavel Sumazin, Debopriya Das, Michael Q. Zhang: Mining ChIP-chip data for transcription factor and cofactor binding sites. ISMB (Supplement of Bioinformatics) 2005: 403-412
- [c1]Michael Q. Zhang: Computational Molecular Biology of Genome Expression and Regulation. PReMI 2005: 31-38
- 2004
- [j8]Fan Long, Hong Liu, Chang S. Hahn, Pavel Sumazin, Michael Q. Zhang, Asher Zilberstein: Genome-wide prediction and analysis of function-specific transcription factor binding sites. In Silico Biology 4 (2004)
- 2003
- [j7]Luca Cartegni, Jinhua Wang, Zhengwei Zhu, Michael Q. Zhang, Adrian R. Krainer: ESEfinder: a web resource to identify exonic splicing enhancers. Nucleic Acids Research 31(13): 3568-3571 (2003)
- 2001
- [j6]Jack E. Tabaska, Ramana V. Davuluri, Michael Q. Zhang: Identifying the 3'-terminal exon in human DNA. Bioinformatics 17(7): 602-607 (2001)
- [j5]Theresa Zhang, Michael Q. Zhang: Promoter Extraction from GenBank (PEG): automatic extraction of eukaryotic promoter sequences in large sets of genes. Bioinformatics 17(12): 1232-1233 (2001)
- 2000
- [j4]Michael Q. Zhang: Discriminant Analysis and Its Application in DNA Sequence Motif Recognition. Briefings in Bioinformatics 1(4): 331-342 (2000)
1990 – 1999
- 1999
- [j3]J. Zhu, Michael Q. Zhang: SCPD: a promoter database of the yeast Saccharomyces cerevisiae. Bioinformatics 15(7): 607-611 (1999)
- [j2]Michael Q. Zhang: Promoter Analysis of Co-regulated Genes in the Yeast Genome. Computers & Chemistry 23(3-4): 233-250 (1999)
- 1993
- [j1]Michael Q. Zhang, T. G. Marr: A weight array method for splicing signal analysis. Computer Applications in the Biosciences 9(5): 499-509 (1993)
Coauthor Index
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last updated on 2013-04-25 21:48 CEST by the dblp team