Xiang-Sun Zhang

Junfei Zhao, Shi-Hua Zhang, Ling-Yun Wu, Xiang-Sun Zhang: Efficient methods for identifying mutated driver pathways in cancer. Bioinformatics 28(22): 2940-2947 (2012)

Xianwen Ren, Yong Wang, Jiguang Wang, Xiang-Sun Zhang: A unified computational model for revealing and predicting subtle subtypes of cancers. BMC Bioinformatics 13: 70 (2012)

Zhi-Ping Liu, Jiguang Wang, Yu-Qing Qiu, Ross K. K. Leung, Xiang-Sun Zhang, Stephen Kwok-Wing Tsui, Luonan Chen: Inferring a protein interaction map of Mycobacterium tuberculosis based on sequences and interologs. BMC Bioinformatics 13(S-7): S6 (2012)

Xiang-Sun Zhang, Zhen-Ping Li, Rui-Sheng Wang, Yong Wang: A combinatorial model and algorithm for globally searching community structure in complex networks. J. Comb. Optim. 23(4): 425-442 (2012)

Qiang Huang, Ling-Yun Wu, Xiang-Sun Zhang: An efficient network querying method based on conditional random fields. Bioinformatics 27(22): 3173-3178 (2011)

Xianwen Ren, Yong-Cui Wang, Yong Wang, Xiang-Sun Zhang, Nai-Yang Deng: Improving accuracy of protein-protein interaction prediction by considering the converse problem for sequence representation. BMC Bioinformatics 12: 409 (2011)

Zhi-Ping Liu, Jiguang Wang, Yu-Qing Qiu, Ross K. K. Leung, Xiang-Sun Zhang, Stephen Kwok-Wing Tsui, Luonan Chen: Inferring Protein-Protein Interactions Based on Sequences and Interologs in Mycobacterium Tuberculosis. ICIC (3) 2011: 91-96

Shi-Hua Zhang, Junfei Zhao, Xiang-Sun Zhang: Co-community Structure in Multiple Evolving Networks. CoRR abs/1111.1365 (2011)

Zhi-Ping Liu, Ling-Yun Wu, Yong Wang, Xiang-Sun Zhang, Luonan Chen: Prediction of protein-RNA binding sites by a random forest method with combined features. Bioinformatics 26(13): 1616-1622 (2010)

Yu-Qing Qiu, Shi-Hua Zhang, Xiang-Sun Zhang, Luonan Chen: Detecting disease associated modules and prioritizing active genes based on high throughput data. BMC Bioinformatics 11: 26 (2010)

Zhi-Ping Liu, Xiang-Sun Zhang, Luonan Chen: Inferring gene regulatory networks from expression data with prior knowledge by linear programming. ICMLC 2010: 3067-3072

Rui-Sheng Wang, Guangxu Jin, Xiang-Sun Zhang, Luonan Chen: Modeling post-transcriptional regulation activity of small non-coding RNAs in Escherichia coli. BMC Bioinformatics 10(S-4) (2009)

Shi-Hua Zhang, Hong-Wei Liu, Xue-Mei Ning, Xiang-Sun Zhang: A hybrid graph-theoretic method for mining overlapping functional modules in large sparse protein interaction networks. IJDMB 3(1): 68-84 (2009)

Ling-Yun Wu, Zhen-Ping Li, Rui-Sheng Wang, Xiang-Sun Zhang, Luonan Chen: Self-organizing map approaches for the haplotype assembly problem. Mathematics and Computers in Simulation 79(10): 3026-3037 (2009)

Jiguang Wang, Shi-Hua Zhang, Yong Wang, Luonan Chen, Xiang-Sun Zhang: Disease-Aging Network Reveals Significant Roles of Aging Genes in Connecting Genetic Diseases. PLoS Computational Biology 5(9) (2009)

Yong Wang, Ling-Yun Wu, Ji-Hong Zhang, Zhong-Wei Zhan, Xiang-Sun Zhang, Luonan Chen: Evaluating Protein Similarity from Coarse Structures. IEEE/ACM Trans. Comput. Biology Bioinform. 6(4): 583-593 (2009)

Zhi-Ping Liu, Yong Wang, Tieqiao Wen, Xiang-Sun Zhang, Weiming Xia, Luonan Chen: Dynamically dysfunctional protein interactions in the development of Alzheimer's disease. SMC 2009: 4262-4267

Shi-Hua Zhang, Rui-Sheng Wang, Xiang-Sun Zhang, Luonan Chen: Fuzzy System Methods in Modeling Gene Expression and Analyzing Protein Networks. Fuzzy Systems in Bioinformatics and Computational Biology 2009: 165-189

Ji-Hong Zhang, Ling-Yun Wu, Jian Chen, Xiang-Sun Zhang: A fast haplotype inference method for large population genotype data. Computational Statistics & Data Analysis 52(11): 4891-4902 (2008)

Zhi-Ping Liu, Ling-Yun Wu, Yong Wang, Xiang-Sun Zhang, Luonan Chen: Protein cavity clustering based on community structure of pocket similarity network. IJBRA 4(4): 445-460 (2008)

Rui-Sheng Wang, Shi-Hua Zhang, Yong Wang, Xiang-Sun Zhang, Luonan Chen: Clustering complex networks and biological networks by nonnegative matrix factorization with various similarity measures. Neurocomputing 72(1-3): 134-141 (2008)

Rui-Sheng Wang, Guangxu Jin, Xiang-Sun Zhang, Luonan Chen: Reconstruction of Regulator Activity in E. coli Post-Transcription Processes. BIBM 2008: 339-342

Zhen-Ping Li, Shi-Hua Zhang, Yong Wang, Xiang-Sun Zhang, Luonan Chen: Alignment of molecular networks by integer quadratic programming. Bioinformatics 23(13): 1631-1639 (2007)

Rui-Sheng Wang, Yong Wang, Xiang-Sun Zhang, Luonan Chen: Inferring transcriptional regulatory networks from high-throughput data. Bioinformatics 23(22): 3056-3064 (2007)

Zhi-Ping Liu, Ling-Yun Wu, Yong Wang, Luonan Chen, Xiang-Sun Zhang: Predicting gene ontology functions from protein's regional surface structures. BMC Bioinformatics 8 (2007)

Rui-Sheng Wang, Yong Wang, Ling-Yun Wu, Xiang-Sun Zhang, Luonan Chen: Analysis on multi-domain cooperation for predicting protein-protein interactions. BMC Bioinformatics 8 (2007)

Ji-Hong Zhang, Ling-Yun Wu, Yu-Ying Zhao, Xiang-Sun Zhang: An optimization approach to the reconstruction of positional DNA sequencing by hybridization with errors. European Journal of Operational Research 182(1): 413-427 (2007)

Yong Wang, Ling-Yun Wu, Luonan Chen, Xiang-Sun Zhang: Supervised classification of protein structures based on convex hull representation. IJBRA 3(2): 123-144 (2007)

Zhen-Jun Shi, Xiang-Sun Zhang, Jie Shen: Convergence analysis of adaptive trust region methods. RAIRO - Operations Research 41(1): 105-121 (2007)

Rui-Sheng Wang, Shi-Hua Zhang, Xiang-Sun Zhang, Luonan Chen: Identifying Modules in Complex Networks by a Graph-Theoretical Method and Its Application in Protein Interaction Networks. ICIC (2) 2007: 1090-1101

Rui-Sheng Wang, Yong Wang, Xiang-Sun Zhang, Luonan Chen: Detecting Community Structure in Complex Networks by Optimal Rearrangement Clustering. PAKDD Workshops 2007: 119-130

Yong Wang, Trupti Joshi, Xiang-Sun Zhang, Dong Xu, Luonan Chen: Inferring gene regulatory networks from multiple microarray datasets. Bioinformatics 22(19): 2413-2420 (2006)

Shi-Hua Zhang, Xue-Mei Ning, Xiang-Sun Zhang: Identification of functional modules in a PPI network by clique percolation clustering. Computational Biology and Chemistry 30(6): 445-451 (2006)

Ling-Yun Wu, Xiang-Sun Zhang, Ju-Liang Zhang: Capacitated facility location problem with general setup cost. Computers & OR 33: 1226-1241 (2006)

Shi-Hua Zhang, Hong-Wei Liu, Xue-Mei Ning, Xiang-Sun Zhang: A Graph-Theoretic Method for Mining Functional Modules in Large Sparse Protein Interaction Networks. ICDM Workshops 2006: 130-135

Shi-Hua Zhang, Xue-Mei Ning, Hong-Wei Liu, Xiang-Sun Zhang: Prediction of Protein Complexes Based on Protein Interaction Data and Functional Annotation Data Using Kernel Methods. ICIC (3) 2006: 514-524

Yong Wang, Trupti Joshi, Dong Xu, Xiang-Sun Zhang, Luonan Chen: Supervised Inference of Gene Regulatory Networks by Linear Programming. ICIC (3) 2006: 551-561

Yong Wang, Ling-Yun Wu, Xiang-Sun Zhang, Luonan Chen: Automatic Classification of Protein Structures Based on Convex Hull Representation by Integrated Neural Network. TAMC 2006: 505-514

Rui-Sheng Wang, Ling-Yun Wu, Zhen-Ping Li, Xiang-Sun Zhang: Haplotype reconstruction from SNP fragments by minimum error correction. Bioinformatics 21(10): 2456-2462 (2005)

Zhen-Ping Li, Wenfeng Zhou, Xiang-Sun Zhang, Luonan Chen: A parsimonious tree-grow method for haplotype inference. Bioinformatics 21(17): 3475-3481 (2005)

Yu-Ying Zhao, Ling-Yun Wu, Ji-Hong Zhang, Rui-Sheng Wang, Xiang-Sun Zhang: Haplotype assembly from aligned weighted SNP fragments. Computational Biology and Chemistry 29(4): 281-287 (2005)

Xiang-Sun Zhang, Yong Wang, Zhong-Wei Zhan, Ling-Yun Wu, Luonan Chen: Exploring Protein's Optimal Hp Configurations by Self-organizing Mapping. J. Bioinformatics and Computational Biology 3(2): 385-400 (2005)

Tianshou Zhou, Luonan Chen, Yun Tang, Xiang-Sun Zhang: Aligning Multiple Protein Structures by Deterministic Annealing. J. Bioinformatics and Computational Biology 3(4): 837-860 (2005)

Ji-Hong Zhang, Ling-Yun Wu, Xiang-Sun Zhang: Reconstruction of DNA sequencing by hybridization. Bioinformatics 19(1): 14-21 (2003)

Xiang-Sun Zhang, Hui-Can Zhu: A Neural Network Model for Quadratic Programming with Simple Upper and Lower Bounds and its Application to Linear Programming. ISAAC 1994: 119-127

Ding-Zhu Du, Xiang-Sun Zhang (Eds.): Algorithms and Computation, 5th International Symposium, ISAAC '94, Beijing, P. R. China, August 25-27, 1994, Proceedings. Lecture Notes in Computer Science 834, Springer 1994, isbn 3-540-58325-4

Xiang-Sun Zhang, De-Gang Liu: A Note on the Continuity of Solutions of Parametric Linear Programs. Math. Program. 47: 143-153 (1990)