Xuegong Zhang

Hongshan Jiang, Ying Zhao, Wenguang Chen, Weimin Zheng, Xuegong Zhang: Improving cis-regulatory elements modeling by consensus scaffolded mixture models. SCIENCE CHINA Information Sciences 56(1): 1-11 (2013)

Minghua Deng, Rui Jiang, Fengzhu Sun, Xuegong Zhang (Eds.): Research in Computational Molecular Biology - 17th Annual International Conference, RECOMB 2013, Beijing, China, April 7-10, 2013. Proceedings. Lecture Notes in Computer Science 7821, Springer 2013, isbn 978-3-642-37194-3

Chao Wu, Jun Zhu, Xuegong Zhang: Integrating gene expression and protein-protein interaction network to prioritize cancer-associated genes. BMC Bioinformatics 13: 182 (2012)

Zhengpeng Wu, Xi Wang, Xuegong Zhang: Using non-uniform read distribution models to improve isoform expression inference in RNA-Seq. Bioinformatics 27(4): 502-508 (2011)

Weichen Wang, Xuegong Zhang: Network-based group variable selection for detecting expression quantitative trait loci (eQTL). BMC Bioinformatics 12: 269 (2011)

Lu Meng, Fengzhu Sun, Xuegong Zhang, Michael S. Waterman: Sequence Alignment as Hypothesis Testing. Journal of Computational Biology 18(5): 677-691 (2011)

Likun Wang, Zhixing Feng, Xi Wang, Xiaowo Wang, Xuegong Zhang: DEGseq: an R package for identifying differentially expressed genes from RNA-seq data. Bioinformatics 26(1): 136-138 (2010)

Michael Q. Zhang, Michael S. Waterman, Xuegong Zhang: The Seventh Asia Pacific Bioinformatics Conference (APBC2009). BMC Bioinformatics 10(S-1) (2009)

Wangshu Zhang, Feng Zeng, Xuebing Wu, Xuegong Zhang, Rui Jiang: A Comparative Study of Ensemble Learning Approaches in the Classification of Breast Cancer Metastasis. IJCBS 2009: 242-245

Bo Jiang, Xuegong Zhang, Tianxi Cai: Estimating the Confidence Interval for Prediction Errors of Support Vector Machine Classifiers. Journal of Machine Learning Research 9: 521-540 (2008)

Ujjwal Maulik, Anirban Mukhopadhyay, Sanghamitra Bandyopadhyay, Michael Q. Zhang, Xuegong Zhang: Multiobjective fuzzy biclustering in microarray data: Method and a new performance measure. IEEE Congress on Evolutionary Computation 2008: 1536-1543

Yonghong Peng, Xuegong Zhang: Integrative data mining in systems biology: from text to network mining. Artificial Intelligence in Medicine 41(2): 83-86 (2007)

Jing Zhang, Bo Jiang, Ming Li, John Tromp, Xuegong Zhang, Michael Q. Zhang: Computing exact P-values for DNA motifs. Bioinformatics 23(5): 531-537 (2007)

Bo Jiang, Michael Q. Zhang, Xuegong Zhang: OSCAR: One-class SVM for accurate recognition of cis-elements. Bioinformatics 23(21): 2823-2828 (2007)

Jin Gu, Hu Fu, Xuegong Zhang, Yanda Li: Identifications of conserved 7-mers in 3'-UTRs and microRNAs in Drosophila. BMC Bioinformatics 8 (2007)

Chaolin Zhang, Xuegong Zhang, Michael Q. Zhang, Yanda Li: Neighbor number, valley seeking and clustering. Pattern Recognition Letters 28(2): 173-180 (2007)

Tingting Li, Hu Fu, Xuegong Zhang: Prediction of Kinase-Specific Phosphorylation Sites by One-Class SVMs. BIBM 2007: 217-222

Xuegong Zhang: Pattern Recognition in Mining High-Throughput Genomics/Proteomics Data: The New Challenges in Old Questions. ICCTA 2007: 242-244

Xuegong Zhang, Gabriel Dragffy, Anthony G. Pipe: Embryonics: A Path to Artificial Life? Artificial Life 12(3): 313-332 (2006)

Fang Fang, Shicai Fan, Xuegong Zhang, Michael Q. Zhang: Predicting methylation status of CpG islands in the human brain. Bioinformatics 22(18): 2204-2209 (2006)

Xuegong Zhang, Xin Lu, Qian Shi, Xiu-qin Xu, Hon-chiu E. Leung, Lyndsay N. Harris, James D. Iglehart, Alexander Miron, Jun S. Liu, Wing Hung Wong: Recursive SVM feature selection and sample classification for mass-spectrometry and microarray data. BMC Bioinformatics 7: 197 (2006)

Jianhua Xu, Xuegong Zhang, Suqin Sun: Tuning SVM Parameters for Classifying Geographical Origins of Chinese Medical Herbs. IJWMIP 4(4): 643-657 (2006)

Chaolin Zhang, Xuesong Lu, Xuegong Zhang: Significance of Gene Ranking for Classification of Microarray Samples. IEEE/ACM Trans. Comput. Biology Bioinform. 3(3): 312-320 (2006)

Xiaowo Wang, Jing Zhang, Fei Li, Jin Gu, Tao He, Xuegong Zhang, Yanda Li: MicroRNA identification based on sequence and structure alignment. Bioinformatics 21(18): 3610-3614 (2005)

Keyue Ding, Jing Zhang, Kaixin Zhou, Yan Shen, Xuegong Zhang: htSNPer1.0: software for haplotype block partition and htSNPs selection. BMC Bioinformatics 6: 38 (2005)

Chenghai Xue, Fei Li, Tao He, Guo-Ping Liu, Yanda Li, Xuegong Zhang: Classification of real and pseudo microRNA precursors using local structure-sequence features and support vector machine. BMC Bioinformatics 6: 310 (2005)

Hua Xu, Peifa Jia, Xuegong Zhang: A Neural Network Based Method for Shape Measurement in Steel Plate Forming Robot. ISNN (3) 2005: 291-296

Hua Xu, Peifa Jia, Xuegong Zhang: A Novel Chamber Scheduling Method in Etching Tools Using Adaptive Neural Networks. ISNN (3) 2005: 908-913

Xi Ma, Jun Cai, Wei Hu, Yimin Zhang, Yanda Li, Xuegong Zhang: Discovering possible context dependences around SNP sites in human genes with Bayesian network learning. ICARCV 2004: 1315-1319

Xuesong Lu, Yanda Li, Xuegong Zhang: A simple strategy for detecting outlier samples in microarray data. ICARCV 2004: 1331-1335

Justin J. Song, Eric Li, Wei Hu, Steven Ge, Chunrong Lai, Yimin Zhang, Xuegong Zhang, Wenguang Chen, Weimin Zheng: Parallelization of Bayesian Network based SNPs Pattern Analysis and Performance Characterization on SMP/HT. ICPADS 2004: 315-322

Jianhua Xu, Xuegong Zhang: A Learning Algorithm with Gaussian Regularizer for Kernel Neuron. ISNN (1) 2004: 252-257

Kai Yu, Liang Ji, Xuegong Zhang: Kernel Nearest Neighbor Algorithm. Neural Processing Letters 15(2): 147-156 (2002)

Hui Yan, Xuegong Zhang, Yanda Li, Liqin Shen, Weibin Zhu: The signal reconstruction of speech by KPCA. INTERSPEECH 2000: 91-93

Wenkai Lu, Xuegong Zhang, Yanda Li, Liqin Shen, Weibin Zhu: Joint speech signal enhancement based on spectral subtraction and SVD filter. INTERSPEECH 2000: 656-659